Publications:


 Goverdhan Mehta, Saikat Sen, T.N. Guru Row, Deepak Chopra, Sayani Chatttopdhyay, OC: Strength vs. Accessibility: Unraveling the Patterns of SelfRecognition in a Conformationally Locked Amino Alchohol (used GAUSSIAN 98 program package)[appears in www.eurjoc.org,2007.
 Goverdhan Mehta, Saikat Sen, Kailasam Venkatesan, OC:Additive induced ploymorphous behavior of a conformationally locked hexol(used GAUSSIAN 98 program package)[appears in The Royal Society of Chemistry 2007]
 Jorly Joseph and Eluvathingal D. Jemmis, IPC :Red, Blue, or NoShift in Hydrogen Bonds: A Unified Explanation[appears in J. AM. CHEM. SOC. 9 VOL. 129, NO. 15, 2007]
 Kausik Majumdar and Navakanta Bhat, ECE :Bandstructure effects in ultrathinbody doublegate field effect transistor:A fullband analysis(used high performance computational resources)[appears in JOURNAL OF APPLIED PHYSICS @2008, ,103, 114503]
 Vikrant V. Naik and S. Vasudevan, IPC: Conformational Dynamics in Alkyl Chains of an Anchored Bilayer: A Molecular Dynamics Study[appears in J. Phys. Chem. C, 2009, 113 (20), pp 88068813]
 Ravindra K., Nikhil Vijay Shende, N. Balakrishnan, AE: CFD computations for Common Research Model using the code HIFUN[appears in Fourth AIAA Drag Prediction Workshop, San Antonio, TX June 2122, 2009]
 Jain, D K, A Chakraborty and R S Nanjundiah, CES: On the role of cloud adjustment time scale in simulating precipitation with relaxed ArakawaSchubert Convection scheme.[appears in Meteorology and Atmospheric Physics@2012, 115 (12). pp 113]
 Kumar S V, Nanjundiah R S, Thazhuthaveetil, M J, and Govindrajan R, CES: Impact of Message Compression on the Scalability of an Atmospheric Modelling.Application on Clusters.[appears in Journal of Parallel Computing@2008,doi:10.1016/j.parco2007.10.0.002, 34, 116]
 Mishra S., J Srinivasan and R S Nanjundiah, CES: Impact of temporal resolution on ITCZ rainfall.
 Sahaney S and R S Nanjundiah, CES:Impact of Convective Downdraft on Rainfall in an Aquaplanet model.[appears in eprints@iisc 2008, Annales Geophysicae, 26 (7). pp. 18771887 ]
 Chakraborty, A., R S Nanjundiah and J Srinivasan, CES: Impact of African Orography on Somali Jet. Intl. [appears in eprints@iisc 2009,Journal of Climatology, 29, 983992]
 V. Shukla, M. Brachet and R. Pandit, Physics: Turbulence in the twodimensional Fouriertruncated GrossPitaevskii equation
 A.R. Nayak and R. Pandit, Physics:Spiralwave dynamics in ionically realistic mathematical models for human ventricular tissue: The effects of mechanical deformation.
 J.M. Kurdestany, R.V. Pai, S. Mukerjee, and R. Pandit, Physics: Phases,transitions, and boundary conditions in a model of interacting bosons
 A. Gupta, P. Perlekar and R. Pandit, Physics: Twodimensional, homogeneous,isotropic fluid turbulence with polymer additives.
 S.S. Ray, D. Mitra and R. Pandit, Physics: The universality of dynamic multiscaling in homogeneous,isotropic navierstokes and passivescalar turbulen[appears in New J. Phys. @2008, doi:10.1088/13672630/10/3/033003]
 U. Frisch, S.S. Ray, G. Sahoo, D. Banerjee, and R. Pandit, Physics: Realspace manifestations of bottlenecks in turbulence spectra[appears in American Physical Society @2013]
 R.V. Pai, J.M. Kurdestany, K. Sheshadri, and R. Pandit, Physics: sehubbard models in confining potentials: Inhomogeneous meanfield theory.
 R. Pandit, P. Perlekar, and S.S. Ray, Physics: Statistical properties of turbulence: An overview
 G. Sahoo, D. Mitra, and R. Pandit, Physics: Dynamo onset as a firstorder transition: Lessons from a shell model formagnetohydrodynamics.
 T.K. Shajahan, A.R. Nayak, and R. Pandit, Physics: Spiralwave turbulence and its control in the presence of inhomogeneities in four mathematical models of cardiac tissue.
 R. Majumder, A. R. Nayak, and R. Pandit. Scrollwave dynamics in human cardiac tissue, Physics: lessons from a mathematical model with inhomogeneties and fiber architecture.
 R.V. Pai, K. Sheshadri, and R. Pandit, Physics: Phases and transitions in the spin1 bosehubbard model: Systematics of a meanfield theory
 P. Perlekar and R. Pandit, Physics: Turbulenceinduced melting of a nonequilibrium vortex crystal in a forced thin fluid film.[appears in New J. Phys.@201012 023033]
 R. Pandit, S.S. Ray, and D. Mitra, Physics: Dynamic multiscaling in turbulence.
 U. Frisch, S. Kurien, R. Pandit, W. Pauls, S.S. Ray, A. Wirth, and JZ. Zhu, Physics: Hyperviscosity, galerkin truncation and bottlenecks in turbulence.
 P. Perlekar, D. Mitra, and R. Pandit, Physics: Direct numerical simulations of statistically steady, homogeneous, isotropic fluid turbulence with polymer additives. [appears in Phys. Rev. E 82, 066313 (2010).
 P. Perlekar and R. Pandit, Physics: Statistically steady turbulence in thin films: Direct numerical simulations with ekman friction.
[appears in New J. Phys. 11 No 7 (July 2009) 073003 (15pp)]
 G. Sahoo, P. Perlekar, and R. Pandit, Physics: Systematics of the magneticprandtlnumber dependence of homogeneous, isotropic magnetohydrodynamic turbulence. [appears in New J. Phys. 13 01303 (Jan 2011)]
 P. Perlekar, S. S. Ray, D. Mitra, and R. Pandit, Physics: The persistence problem in twodimensional fluid turbulence [appears in Phys.Rev.Lett.106:054501,2011]
 S.S. Ray, D. Mitra, P. Perlekar, and R. Pandit, Physics: Dynamic multiscaling in twodimensional fluid turbulence.
 J.M. Kurdestany, R.V. Pai, and R. Pandit, Physics:The inhomogeneous extended bosehubbard model: Meanfield theory.
 R. Majumder, A.R. Nayak, and R. Pandit , Physics: Nonequilibrium arrhythmic states and transitions in a mathematical model for diffuse fibrosis in human cardiac tissue
 Sahany S, V Venugopal and R S Nanjundiah, CES: The Mumbai Heavy Rainfall Event of 26 July 2005, Through the Lens of a Cloud Resolving Model [appears in Meteorology & Atmospheric Physics 2010, 109, pp 115128].
 Praveen Anand, KalidasYeturu and Nagasuma Chandra, Bioinformatics : PocketAnnotate: Towards sitebased function annotation. [appears in Nucleic Acids Res. 2012 Jul;40(Web Server issue):W4008. doi: 10.1093/nar/gks421. Epub 2012 May 22]
 Yeturu K, Chandra N, Bioinformatics:PocketAlign a novel algorithm for aligning binding sites in protein structures. J ChemInf Model. [appears in J Chem Inf Model. 2011 Jul 25;51(7):172536. doi: 10.1021/ci200132z. Epub 2011 Jun 21]
 Nagasuma Chandra, Raghu Bhagavat, Eshita Sharma, Srikanth Reddy, Kumar Somasundaram, Bioinformatics: Virtual screening, identification and experimental testing of novel inhibitors of PBEF1/Visfatin/NMPRTase for glioma therapy [appears in J Clin Bioinforma. 2011 Jan 20;1(1):5. doi: 10.1186/2043911315]
 Yeturu K, Chandra N, Bioinformatics: PocketMatch: A new algorithm to compare binding sites in protein structures. [appears in BMC Bioinformatics. 2008 Dec 17;9:543. doi: 10.1186/147121059543]
 Raman K, Yeturu K and Chandra N, Bioinfomatics: targetTB: A target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genomescale structural analysis [appears in eprints@iisc, 2008]
 Poddar P., Chandra N., Ganapathiraju M., Sekar K., KleinSeetharaman J., Reddy R.& Balakrishnan N, Bioinfomatics: Genome sequence analysis using suffix arrays: Application leading to evolutionary insights. [appears in eprits@iisc, 2007]
 Khodade P, Prabhu R, Chandra N, Raha S, and Govindarajan R Physics: Parallel Implementation of Autodock. J. Appl. Crystallography [appears in J. Appl. Crystallogr, 2007]
 Karthik Raman, Preethi Rajagopalan and Nagasuma Chandra, Bioinfomatics: Hallmarks of Mycolic Acid Biosynthesis: A Comparative Genomics Study Proteins: Structure, Function and Bioinformatics [appears in eprints@iisc, 2007]
 Ketki Verkhedkar, Karthik Raman, Nagasuma Chandra and Saraswathi Vishveshwara, Bioinfomatics: Metabolome based reaction graphs of M. tuberculosis and M. leprae: A comparative network analysis
 Jain, D K, A Chakraborty and R S Nanjundiah, Meteorology and Atmospheric Physicsatics: On the role of cloud adjustment time scale in simulating precipitation with relaxed Arakawa Schubert Convection scheme [appears in eprints@iisc 2012, Meteorology and Atmospheric Physics 115(12) pp. 113]
 Sahany S, V Venugopal and R S Nanjundiah, Meteorology and Atmospheric Physicsatics: The Mumbai Heavy Rainfall Event of 26 July 2005, Through the Lens of a Cloud Resolving Model.[appears in eprints@iisc 2007, Meteorology and Atmospheric Physics 109 pp.115128]
 Chakraborty, A., R S Nanjundiah and J Srinivasan, Meteorology and Atmospheric Physicsatics: Impact of African Orography on Somali Jet. Intl. Journal of Climatology. [appears in eprints@iisc 2009, Meteorology and Atmospheric Physics 29 pp.983992]
 Mishra S., J Srinivasan and R S Nanjundiah, Meteorology and Atmospheric Physicsatics:Impact of temporal resolution on ITCZ rainfall. Monthly Weather Review. [appears in eprints@iisc 2008, Meteorology and Atmospheric Physics 136 pp.40774091]
 Sahaney S and R S Nanjundiah, Meteorology and Atmospheric Physicsatics: Impact of Convective Downdraft on Rainfall in an Aquaplanet model. Annales Geophysicae [appears in Annales Geophysicae@2008, 26(7) pp.18771887]
 Kumar S V, Nanjundiah R S, Thazhuthaveetil, M J, and Govindrajan R, SERC: Impact of Message Compression on the Scalability of an Atmospheric Modelling. [appears in Journal of Parallel Computing@2008, vol.34, no.1, pp.116]
 V. Vadhana and K. G. Ayappa, Department of Chemical Engineering & Centre for Biosystems Science and Engineering : Structure and Dynamics of Octamethylcyclotetrasiloxane Confined between Mica Surfaces. [appears in J. Phys. Chem. B, 2016, 120 (11), pp 2951–2967]

Publication that used Bluegene:/L


 Preeti Malakar, Thomas George, Sameer Kumar, Rashmi Mittal, Vijay Natarajan, Yogish Sabharwal, Vaibhav Saxena, Sathish Vadhiyar,SERC: A Divide and Conquer Strategy for Scaling Weather Simulations with Multiple Regions of Interest [appears in ACM/IEEE Supercomputing (SC 2012), at Salt Lake City, Utah]
 Swastibrata Bhattacharyya, Yoshiyuki Kawazoe, and Abhishek K. SinghSERC: Effect of the Edge Type and Strain on the Structural, Electronic and Magnetic Properties of the BNRs [appears in J Nanosci Nanotechnol @2012 12(3) pp 1899902]
 Karthik Raman, Preethi Rajagopalan and Nagasuma ChandraSERC: Hallmarks of Mycolic Acid Biosynthesis: A Comparative Genomics Study Proteins: Structure, Function and Bioinformatics [appears in eprint@iisc 2007 69 (2) pp. 358368]
 Khodade P., Prabhu R, Chandra N., Raha S.& Govindarajan R.,SERC:Parallel Implementation of Autodock. J. Appl. Crystallogr.[appears in J. Appl. Crystallogr. 2007, 40, pp598599]
 Raman K, Yeturu K and Chandra N, SERC: TargetTB: A target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genomescale structural analysis BMC Systems. [appears in BMC Systems Biology 2008,doi:10.1186/175205092109]
 Yeturu K, Chandra N.,SERC: PocketMatch: A new algorithm to compare binding sites in protein structures [appears in BMC Bioinformatics. 2008;9(1):543. PMID 19091072]
 Nagasuma Chandra, Raghu Bhagavat, Eshita Sharma, Srikanth Reddy,Kumar Somasundaram, Physics: Virtual screening, identification and experimental testing of novel inhibitors of PBEF1/Visfatin/NMPRTase for glioma therapyClinical Bioinformatics [appears in Journal of Clinical Bioinformatics 2011, 1:5 doi:10.1186/2043911315]
 Yeturu K, Chandra N., Bioinformatics: PocketAlign a novel algorithm for aligning binding sites in protein structures. J ChemInf Model [appears in J Chem Inf Model. 2011 Jul 25;51(7):172536. doi: 10.1021/ci200132z. Epub 2011 Jun 21]
 Praveen Anand, KalidasYeturu and Nagasuma Chandra, Biochemistry: PocketAnnotate: Towards sitebased function annotation [appears in Nucleic Acids Res. 2012 Jul;40(Web Server issue):W4008. doi: 10.1093/nar/gks421. Epub 2012 May 22.
 V. Shukla, M. Brachet and R. Pandit, Physics: Turbulence in the twodimensional Fouriertruncated GrossPitaevskii equation []
 A.R. Nayak and R. Pandit, Physics: Spiralwave dynamics in ionically realistic mathematical models for human ventricular tissue
 J.M. Kurdestany, R.V. Pai, S. Mukerjee, and R. Pandit, Physics: Phases,transitions, and boundary conditions in a model of interacting bosons.
 A. Gupta, P. Perlekar, and R. Pandit, Physics: Twodimensional, homogeneous,isotropic fluid turbulence with polymer additives. [appears in physics arXiv:1207.4774, 2012.
 U. Frisch, S.S. Ray, G. Sahoo, D. Banerjee, and R. Pandit., Physics: Realspace manifestations of bottlenecks in turbulence spectra.
 R. Majumder, A.R. Nayak, and R. Pandit, Physics: Nonequilibrium arrhythmic states and transitions in a mathematical model for diffuse fibrosis in human cardiac tissue.
 R.V. Pai, J.M. Kurdestany, K. Sheshadri, and R. Pandit, Physics: Bosehubbard models in confining potentials: Inhomogeneous meanfield theory.
 J.M. Kurdestany, R.V. Pai, and R. Pandit, Physics: The inhomogeneous extended bosehubbard model: Meanfield theory.
 S.S. Ray, D. Mitra, P. Perlekar, and R. Pandit, Physics: Dynamic multiscaling in twodimensional fluid turbulence. [appears in Phys. Rev. Lett. 107, 184503 (2011)
 R. Majumder, A.R. Nayak, and R. Pandit, Physics: An overview of spiral and scrollwave dynamics in mathematical models for cardiac tissue.
 R. Majumder, A. R. Nayak, and R. Pandit, Physics: Scrollwave dynamics in human cardiac tissue: lessons from a mathematical model with inhomogeneties and fiber architecture.
 P. Perlekar, S. S. Ray, D. Mitra, and R. Pandit, Physics: The persistence problem in twodimensional fluid turbulence.[appears in Phys.Rev.Lett.106:054501,2011]
 G. Sahoo, P. Perlekar, and R. Pandit, Physics: Systematics of the magneticprandtlnumber dependence of homogeneous, isotropic magnetohydrodynamic turbulence. [appears in New J. Phys.@2011, Volume 13]
 P. Perlekar, D. Mitra, and R. Pandit, Physics: Direct numerical simulations of statistically steady, homogeneous, isotropic fluid turbulence with polymer additives. [appears in Phys. Rev. E 82, 066313 (2010)]
 G. Sahoo, D. Mitra, and R. Pandit, Physics: Dynamo onset as a firstorder transition: Lessons from a shell model for magnetohydrodynamics. [appears in Physical Review E – Statistical, Nonlinear and Soft Matter Physics@2010, 81 (3, Par)]
 P. Perlekar and R. Pandit, Physics: Turbulenceinduced melting of a nonequilibrium vortex crystal in a forced thin fluid film.
[appears in New J. Phys.@2010, Volume 12]
 R. Pandit, P. Perlekar, and S.S. Ray, Physics: Statistical properties of turbulence: An overview. Pramana.
 P. Perlekar and R. Pandit, Physics: Statistically steady turbulence in thin films: Direct nu merical simulations with ekman friction. [appears in New J. Phys. 11 No 7 (July 2009) 073003 (15pp)]
 T.K. Shajahan, A.R. Nayak, and R. Pandit, Physics: Spiralwave turbulence and its control in the presence of inhomogeneities in four mathematical models of cardiac tissue.
 T.K. Shajahan, S. Sinha, and R. Pandit, Physics: The mathematical modelling of inhomogeneities in ventricular tissue
 U. Frisch, S. Kurien, R. Pandit, W. Pauls, S.S. Ray, Physics: A. Wirth, and JZ. Zhu. Hyperviscosity, galerkin truncation and bottlenecks in turbulence.
 S.S. Ray, D. Mitra, , and R. Pandit, Physics: The universality of dynamic multiscaling in homogeneous,isotropic navierstokes and passivescalar turbulen [appears in New J. Phys.@2008, Volume 10.
 R. Pandit, S.S. Ray, and D. Mitra, Physics: Dynamic multiscaling in turbulence.
 R.V. Pai, K. Sheshadri, and R. Pandit, Physics: Phases and transitions in the spin1 bosehubbard model: Systematics of a meanfield theory.
 T.K. Shajahan, S. Sinha, and R. Pandit, Physics: Spiralwave dynamics depends sensitively on inhomogeneities in mathematical models for ventricular tissue.
 R.V. Pai, K. Sheshadri, and R. Pandit, Physics: Meanfield theory for interacting spin1 bosons on a lattice.
